ipyspeck 0.8.4 molecular graphics for Jupyter and Streamlit

Use it in Python

The same renderer and settings in Jupyter and Streamlit.

pip install ipyspeck

from ipyspeck import Speck
w = Speck.from_alphafold("Q8W3K0")
w.apply_preset("cover")
w.save_image("figure.png", width=3000)
w.save_video("movie.mp4", "tour")

pip install stspeck

import stspeck
stspeck.speck(**stspeck.fetch_pdb("4HHB"),
              surface=True, surfaceOpacity=0.3,
              preset="glossy", height=500)

Videos

Click one to load it and play its video; Save video in the player downloads the MP4. The clapperboard button in the viewer makes ready-made videos of any structure, and one line in Python does the same. Step-by-step notebooks go from a first video to your own storyboard.

Gallery

Rendered with ipyspeck, several with the macro depth of field. Click an image to load that scene in the viewer, or open its notebook.